Similarity Analysis of Protein Sequences Based on the EMD Method
DOI:
10.3993/jfbi09201408
Journal of Fiber Bioengineering & Informatics, 7 (2014), pp. 387-395.
Published online: 2014-07
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@Article{JFBI-7-387,
author = {Jihong Zhang, Junsheng Zheng , Fenglan Bai and Liwei Liu},
title = {Similarity Analysis of Protein Sequences Based on the EMD Method},
journal = {Journal of Fiber Bioengineering and Informatics},
year = {2014},
volume = {7},
number = {3},
pages = {387--395},
abstract = {An Empirical Mode Decomposition (EMD) method to analyze the similarities of protein sequences is
proposed. The EMD method was used to divide a signal sequence converted from a protein sequence
into a group of well-behaved Intrinsic Mode Functions (IMFs) and a residue which is monotonic or a
trend. This is so that the similarities can be compared among protein sequences by the corresponding
residues conveniently and intuitively. This work verifies the method's suitability by using the cytochrome
c protein sequences of seven different species.},
issn = {2617-8699},
doi = {https://doi.org/10.3993/jfbi09201408},
url = {http://global-sci.org/intro/article_detail/jfbi/4794.html}
}
TY - JOUR
T1 - Similarity Analysis of Protein Sequences Based on the EMD Method
AU - Jihong Zhang, Junsheng Zheng , Fenglan Bai & Liwei Liu
JO - Journal of Fiber Bioengineering and Informatics
VL - 3
SP - 387
EP - 395
PY - 2014
DA - 2014/07
SN - 7
DO - http://doi.org/10.3993/jfbi09201408
UR - https://global-sci.org/intro/article_detail/jfbi/4794.html
KW - MQ-RBF Quasi-interpolant
KW - EMD
KW - IMFs
KW - Similarity Analysis
KW - DNA Sequences
AB - An Empirical Mode Decomposition (EMD) method to analyze the similarities of protein sequences is
proposed. The EMD method was used to divide a signal sequence converted from a protein sequence
into a group of well-behaved Intrinsic Mode Functions (IMFs) and a residue which is monotonic or a
trend. This is so that the similarities can be compared among protein sequences by the corresponding
residues conveniently and intuitively. This work verifies the method's suitability by using the cytochrome
c protein sequences of seven different species.
Jihong Zhang, Junsheng Zheng , Fenglan Bai and Liwei Liu. (2014). Similarity Analysis of Protein Sequences Based on the EMD Method.
Journal of Fiber Bioengineering and Informatics. 7 (3).
387-395.
doi:10.3993/jfbi09201408
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