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Volume 7, Issue 1
Novel 2D Graphic Representation of Protein Sequence and Its Application

Yongbin Zhao, Xiaohong Li & Zhaohui Qi

Journal of Fiber Bioengineering & Informatics, 7 (2014), pp. 23-33.

Published online: 2014-07

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  • Abstract
In recent years, more and more researchers presented their graphic representations for protein sequence. Here, we present a new 2D graphic representation of protein sequence based on four physicochemical properties of 20 amino acids. By this graphic representation we define a distance calculation formula to quantificationally calculate the similarity degree of different protein sequences. Then we apply the proposed graphical curve and new distance in the similarity/dissimilarity comparison of 10 ND5 proteins and the protein sub-cellular localization prediction about two common test datasets, ZD98 and CL317. The results show the proposed method is easy and effective.
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@Article{JFBI-7-23, author = {Yongbin Zhao, Xiaohong Li and Zhaohui Qi}, title = {Novel 2D Graphic Representation of Protein Sequence and Its Application}, journal = {Journal of Fiber Bioengineering and Informatics}, year = {2014}, volume = {7}, number = {1}, pages = {23--33}, abstract = {In recent years, more and more researchers presented their graphic representations for protein sequence. Here, we present a new 2D graphic representation of protein sequence based on four physicochemical properties of 20 amino acids. By this graphic representation we define a distance calculation formula to quantificationally calculate the similarity degree of different protein sequences. Then we apply the proposed graphical curve and new distance in the similarity/dissimilarity comparison of 10 ND5 proteins and the protein sub-cellular localization prediction about two common test datasets, ZD98 and CL317. The results show the proposed method is easy and effective.}, issn = {2617-8699}, doi = {https://doi.org/10.3993/jfbi03201403}, url = {http://global-sci.org/intro/article_detail/jfbi/4764.html} }
TY - JOUR T1 - Novel 2D Graphic Representation of Protein Sequence and Its Application AU - Yongbin Zhao, Xiaohong Li & Zhaohui Qi JO - Journal of Fiber Bioengineering and Informatics VL - 1 SP - 23 EP - 33 PY - 2014 DA - 2014/07 SN - 7 DO - http://doi.org/10.3993/jfbi03201403 UR - https://global-sci.org/intro/article_detail/jfbi/4764.html KW - Graphic Representation KW - Protein Sequence KW - Sequence Similarity KW - Sub-cellular Location AB - In recent years, more and more researchers presented their graphic representations for protein sequence. Here, we present a new 2D graphic representation of protein sequence based on four physicochemical properties of 20 amino acids. By this graphic representation we define a distance calculation formula to quantificationally calculate the similarity degree of different protein sequences. Then we apply the proposed graphical curve and new distance in the similarity/dissimilarity comparison of 10 ND5 proteins and the protein sub-cellular localization prediction about two common test datasets, ZD98 and CL317. The results show the proposed method is easy and effective.
Yongbin Zhao, Xiaohong Li and Zhaohui Qi. (2014). Novel 2D Graphic Representation of Protein Sequence and Its Application. Journal of Fiber Bioengineering and Informatics. 7 (1). 23-33. doi:10.3993/jfbi03201403
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