Novel 2D Graphic Representation of Protein Sequence and Its Application
DOI:
10.3993/jfbi03201403
Journal of Fiber Bioengineering & Informatics, 7 (2014), pp. 23-33.
Published online: 2014-07
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@Article{JFBI-7-23,
author = {Yongbin Zhao, Xiaohong Li and Zhaohui Qi},
title = {Novel 2D Graphic Representation of Protein Sequence and Its Application},
journal = {Journal of Fiber Bioengineering and Informatics},
year = {2014},
volume = {7},
number = {1},
pages = {23--33},
abstract = {In recent years, more and more researchers presented their graphic representations for protein sequence.
Here, we present a new 2D graphic representation of protein sequence based on four physicochemical
properties of 20 amino acids. By this graphic representation we define a distance calculation formula
to quantificationally calculate the similarity degree of different protein sequences. Then we apply the
proposed graphical curve and new distance in the similarity/dissimilarity comparison of 10 ND5 proteins
and the protein sub-cellular localization prediction about two common test datasets, ZD98 and CL317.
The results show the proposed method is easy and effective.},
issn = {2617-8699},
doi = {https://doi.org/10.3993/jfbi03201403},
url = {http://global-sci.org/intro/article_detail/jfbi/4764.html}
}
TY - JOUR
T1 - Novel 2D Graphic Representation of Protein Sequence and Its Application
AU - Yongbin Zhao, Xiaohong Li & Zhaohui Qi
JO - Journal of Fiber Bioengineering and Informatics
VL - 1
SP - 23
EP - 33
PY - 2014
DA - 2014/07
SN - 7
DO - http://doi.org/10.3993/jfbi03201403
UR - https://global-sci.org/intro/article_detail/jfbi/4764.html
KW - Graphic Representation
KW - Protein Sequence
KW - Sequence Similarity
KW - Sub-cellular Location
AB - In recent years, more and more researchers presented their graphic representations for protein sequence.
Here, we present a new 2D graphic representation of protein sequence based on four physicochemical
properties of 20 amino acids. By this graphic representation we define a distance calculation formula
to quantificationally calculate the similarity degree of different protein sequences. Then we apply the
proposed graphical curve and new distance in the similarity/dissimilarity comparison of 10 ND5 proteins
and the protein sub-cellular localization prediction about two common test datasets, ZD98 and CL317.
The results show the proposed method is easy and effective.
Yongbin Zhao, Xiaohong Li and Zhaohui Qi. (2014). Novel 2D Graphic Representation of Protein Sequence and Its Application.
Journal of Fiber Bioengineering and Informatics. 7 (1).
23-33.
doi:10.3993/jfbi03201403
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